Init version
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162
DEC_GUI/DEC-0.0/population/Population.cpp
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162
DEC_GUI/DEC-0.0/population/Population.cpp
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#include "Population.h"
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#include "../individual/Phenotype.h"
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#include "DEC-0.0/processor/Processor.h"
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#include <cstdlib>
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#include <sstream>
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#include <algorithm>
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AsexualPopulation::~AsexualPopulation(){
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// TODO : <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD>
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}
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AsexualPopulation::AsexualPopulation(int size, PopulationBreedingStrategy* _strategy) :
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Population(_strategy), individs(size/*, 0*/)
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{
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srand(0);
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int RANGE = 1000;
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float gValue;
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// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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for(int i = 0; i < size; i++){
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// <20><><EFBFBD><EFBFBD><EFBFBD>
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std::vector<Chromosome> fGenome;
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std::vector<Chromosome> mGenome;
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// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneF1(Gene::Continious, "X", gValue);
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneF2(Gene::Continious, "Y", gValue);
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneF3(Gene::Continious, "Z", gValue);
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Chromosome chromF("Chrom 1"); // <20><><EFBFBD><EFBFBD>
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chromF.insertGeneToEnd(geneF1);
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chromF.insertGeneToEnd(geneF2);
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chromF.insertGeneToEnd(geneF3);
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneM1(Gene::Continious, "X", gValue);
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneM2(Gene::Continious, "Y", gValue);
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gValue = (rand()%RANGE + 1) / (float) RANGE;
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Gene geneM3(Gene::Continious, "Z", gValue);
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Chromosome chromM("Chrom 1"); // <20><><EFBFBD><EFBFBD>
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chromM.insertGeneToEnd(geneM1);
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chromM.insertGeneToEnd(geneM2);
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chromM.insertGeneToEnd(geneM3);
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fGenome.push_back(chromF);
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mGenome.push_back(chromM);
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Genotype* genotype = new Genotype(fGenome, mGenome);
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// (END) <20><><EFBFBD><EFBFBD><EFBFBD>
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// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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Trait trait1(Trait::Continious, "X", 0.0f);
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Trait trait2(Trait::Continious, "Y", 0.0f);
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Trait trait3(Trait::Continious, "Z", 0.0f);
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Phenotype* phenotype = new Phenotype(trait1);
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phenotype->addTrait(trait2);
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phenotype->addTrait(trait3);
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// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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// <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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InnerSubstratesPool* subPool = 0;
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// (END) <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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this->individs.at(i) = new Individual(genotype, phenotype, subPool, Individual::hermaphrodite, 0);
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} // (END) for(int i = 0; i < size; i++)
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}
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void AsexualPopulation::calculateFitnessAll(){
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for(unsigned int i = 0; i < this->individs.size(); i++){
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this->individs.at(i)->calculateFitness();
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}
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}
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void AsexualPopulation::breedAll(){
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this->breedingStrategy->breed(this);
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}
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void AsexualPopulation::selectionAll(){
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// <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> breedAll
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}
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void AsexualPopulation::mutationAll(){
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}
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void AsexualPopulation::setRegion(Region *_region){
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this->region = _region;
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for(unsigned int i = 0; i < this->individs.size(); i++){
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this->individs.at(i)->setRegion(_region);
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}
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}
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std::string AsexualPopulation::getSatistics(){
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std::stringstream ans;
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long int pSize = this->individs.size();
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ans<<"Population size\t"<<pSize<<"\t";
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//////////////////////////
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double totalFitness = 0.0;
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double best = 0.0;
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double worst= 1000.0;
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for(int i = 0; i < pSize; i++){
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double fitness = this->individs.at(i)->getFitness();
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best = fitness > best ? fitness : best;
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worst= fitness < worst? fitness : worst;
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totalFitness += fitness;
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}
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ans<<"Average fitness\t"<<(totalFitness/pSize);
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ans<<"\tBest\t"<<(best);
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ans<<"\tWorst\t"<<(worst);
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return ans.str();
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}
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void AsexualPopulation::putGeneticStatisticsToStream(std::ostream &out){
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out<<"Population size:\t"<<this->individs.size()<<std::endl;
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// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
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//sort(this->individs.begin(),this->individs.end());
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//std::cout << "lol" << std::endl;
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for(unsigned int i = 0; i < this->individs.size(); i++){
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// out<<(i+1)<<"\t";
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// out<<"Fitness:\t"<<(this->individs.at(i)->getFitness());
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// out<<"\t";
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// out<<"Genotype:\t"<<(this->individs.at(i)->getGenotype());
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// out<<"\t";
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// out<<"Phenotype:\t"<<(this->individs.at(i)->getPhenotype());
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// out<<std::endl;
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std::cout << "lol" << std::endl;
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Processor::fillVectors(this->individs.at(i)->getGenotype());
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}
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}
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void AsexualPopulation::putGeneticSimpleStatisticsToStream(std::ostream &out){
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for(unsigned int i = 0; i < this->individs.size(); i++){
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out<<(i+1)<<"\t"<<(this->individs.at(i)->getFitness());
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out<<"\t"<<(this->individs.at(i)->getGenotype().toSimpleString());
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//out<<"\t";
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out<<(this->individs.at(i)->getPhenotype().toSimpleString());
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out<<std::endl;
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}
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}
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void AsexualPopulation::putGeneticMaxModuleStatisticsToStream(std::ostream &out){
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for(unsigned int i = 0; i < this->individs.size(); i++){
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out<<(i+1)<<"\t"<<(this->individs.at(i)->getFitness());
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out<<"\t"<<(this->individs.at(i)->getGenotype().toMaxModuleAB());
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//out<<"\t";
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//out<<(this->individs.at(i)->getPhenotype().toSimpleString());
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out<<std::endl;
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}
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}
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