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Init version

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This commit is contained in:
Aleksey M. Mukhin
2024-10-03 18:43:04 +07:00
commit f80052961f
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DEC_GUI/DEC-0.0/processor/Processor.cpp Normal file
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#include "Processor.h"
#include "Settings.h"
#include "../population/Population.h"
#include "../individual/Phenotype.h"
#include "../individual/genome/strategies/GenotypeToPhenotypeStrategy.h"
#include <fstream>
#include <string>
#include <sstream>
#include <QGlobal.h>
#include <QTime>
#include <QVector>
#include <QString>
AsexualPopulation* Processor::popul;
//std::vector<Individual*> Processor::individs;
void Processor::test(/*int initPSize, int steps*/){
std::ofstream statFile("statFile.txt");
std::string stat;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int maxGenerations = Settings::Iterations;
int initPopSize = Settings::InitPopSize;
AsexualPopulation population(initPopSize);
population.setBreedingStrategy(PopulationBreedingStrategy::getInstance(Settings::BreedingStrategy));
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
for(int i = 0; i < maxGenerations; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD>)
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
population.calculateFitnessAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.breedAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.mutationAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD> <20><><EFBFBD>)
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20>.<2E>.)
population.selectionAll();
//--- <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> ---
stat = population.getSatistics();
statFile<<stat<<std::endl;
if(Settings::WRITE_FULL_STATISTICS_TO_FILE){
std::stringstream ss;
ss<<"generation."<<(i)<<".txt";
std::ofstream genFile(ss.str().c_str());
population.putGeneticStatisticsToStream(genFile);
genFile.close();
}
//------------------
}
statFile.close();
}
void Processor::test01(/*int initPSize, int steps*/){
std::ofstream statFile("statFile.txt");
std::string stat;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int maxGenerations = Settings::Iterations;
long initPopSize = Settings::InitPopSize;
long int maxIndivids = Settings::KMaxParameter;
Position3D<double> position(0, 0, 0, 1000, 1000, 1000);
Region region(position, maxIndivids);
AsexualPopulation population(initPopSize);
population.setBreedingStrategy(PopulationBreedingStrategy::getInstance(Settings::BreedingStrategy));
population.setRegion(&region);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
for(int i = 0; i < maxGenerations; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD>)
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
population.calculateFitnessAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.breedAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.mutationAll();
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD> <20><><EFBFBD>)
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20>.<2E>.)
population.selectionAll();
//--- <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> ---
stat = population.getSatistics();
statFile<<stat<<std::endl;
if(Settings::WRITE_FULL_STATISTICS_TO_FILE){
std::stringstream ss;
ss<<"generation."<<(i)<<".txt";
std::ofstream genFile(ss.str().c_str());
population.putGeneticStatisticsToStream(genFile);
genFile.close();
}
//------------------
}
statFile.close();
}
///
void Processor::testInOutBreeding01(){
std::ofstream statFile("statFile.txt");
std::string stat;
std::cout << "breed" << std::endl;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int maxGenerations = Settings::Iterations;
long initPopSize = Settings::InitPopSize;
long int maxIndivids = Settings::KMaxParameter;
Position3D<double> position(0, 0, 0, 1000, 1000, 1000);
Region region(position, maxIndivids);
qsrand(0);
int RANGE = 1000;
int PRECISION = 10;
float gValue;
std::vector<Individual*> individs;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < maxIndivids/2; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD>
std::vector<Chromosome> fGenome;
std::vector<Chromosome> mGenome;
std::vector<Chromosome> chroms;
for(int j = 0; j < 2; j++){
// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
RANGE = 10;
gValue = (float)(qrand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF1(Gene::Continious, "A coadaptive", gValue);
gValue = (float)(rand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF2(Gene::Continious, "B coadaptive", gValue);
RANGE = 2;
gValue = (rand()%(RANGE + 1)) / (float) RANGE;
Gene geneF3(Gene::Continious, "C disease", gValue);
gValue = (rand()%(RANGE + 1)) / (float) RANGE;
Gene geneF4(Gene::Continious, "D disease", gValue);
gValue = (rand()%(RANGE + 1)) / (float) RANGE;
Gene geneF5(Gene::Continious, "E disease", gValue);
gValue = (rand()%(RANGE + 1)) / (float) RANGE;
Gene geneF6(Gene::Continious, "F disease", gValue);
Chromosome chromF("Chrom 1"); // <20><><EFBFBD><EFBFBD> / <20><><EFBFBD><EFBFBD>
chromF.insertGeneToEnd(geneF1);
chromF.insertGeneToEnd(geneF2);
chromF.insertGeneToEnd(geneF3);
chromF.insertGeneToEnd(geneF4);
chromF.insertGeneToEnd(geneF5);
chromF.insertGeneToEnd(geneF6);
chroms.push_back(chromF);
} // (END) for(int i = 0; i < 2; i++)
fGenome.push_back(chroms.at(0));
mGenome.push_back(chroms.at(1));
Genotype* genotype = new Genotype(fGenome, mGenome);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Trait trait1(Trait::Continious, "coadaptive", 0.0f);
Trait trait2(Trait::Continious, "disease", 0.0f);
Phenotype* phenotype = new Phenotype(trait1);
phenotype->addTrait(trait2);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
InnerSubstratesPool* subPool = 0;
// (END) <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Individual* newInd = new Individual(genotype, phenotype, subPool, Individual::hermaphrodite, 0);
newInd->setGenToPhenStrategy(GenotypeToPhenotypeStrategies::getInstance("inoutbreeding"));
individs.push_back(newInd);
} // (END) for(int i = 0; i < size; i++)
AsexualPopulation population(individs);
population.setBreedingStrategy(PopulationBreedingStrategy::getInstance("inoutbreeding"));
population.setRegion(&region);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
for(int i = 0; i < maxGenerations; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.breedAll();
//--- <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> ---
stat = population.getSatistics();
statFile<<stat<<std::endl;
if(Settings::WRITE_FULL_STATISTICS_TO_FILE){
std::stringstream ss;
std::stringstream ss2;
ss<<"generation."<<(i)<<".xls";
ss2<<"generation."<<(i)<<".txt";
std::ofstream genFile(ss.str().c_str());
std::ofstream genFile2(ss2.str().c_str());
population.putGeneticStatisticsToStream(genFile);
population.putGeneticSimpleStatisticsToStream(genFile2);
genFile.close();
genFile2.close();
}
//------------------
}
statFile.close();
}
void Processor::fillVectors(const Genotype &g)
{
QVector<double> mGenes;
QVector<double> fGenes;
std::cout << "in fill" << std::endl;
for(unsigned int i = 0; i < g.fatherGenome.chromosomes.size(); i++)
{
std::cout <<"ch"<<(i+1)<<":";
const std::vector<Gene> genesF = g.fatherGenome.chromosomes.at(i).getGenesAsVector();
const std::vector<Gene> genesM = g.motherGenome.chromosomes.at(i).getGenesAsVector();
std::cout << "i11111" << std::endl;
Settings::geneName.clear();
for(unsigned int j = 0; j < genesF.size(); j++){
//std::cout<<"\t";
std::cout<<genesF.at(j).getName();//<<", ";
Settings::geneName.push_back(genesF.at(j).getName());
if(genesF.at(j).getGeneType() == Gene::Continious){
//std::cout<<"\t"<<genesF.at(j).getGeneValueCont() <<" " << genesM.at(j).getGeneValueCont() << std::endl;//<<"\t";
//std::cout<<"\t"<< genesM.at(j).getGeneValueCont() << std::endl;//<<"\t";
if (genesM.at(j).getGeneValueCont() < 0)
{
double val = genesM.at(j).getGeneValueCont() * (-1);
mGenes.push_back(val);
}
else
{
mGenes.push_back(genesM.at(j).getGeneValueCont());
}
if (genesF.at(j).getGeneValueCont() < 0)
{
double val = genesF.at(j).getGeneValueCont() * (-1);
fGenes.push_back(val);
}
else
{
fGenes.push_back(genesF.at(j).getGeneValueCont());
}
}
else{
//std::cout<<"\t"<<genesF.at(j).getGeneValueDiscr();//<<"\t";
//std::cout<<"\t"<<genesM.at(j).getGeneValueDiscr();//<<"\t";
mGenes.push_back(genesM.at(j).getGeneValueDiscr());
fGenes.push_back(genesF.at(j).getGeneValueDiscr());
}
//std::cout<<"\t";
}
}
Settings::malesGene.push_back(mGenes);
Settings::femalesGene.push_back(fGenes);
}
void Processor::fillVectors(Genotype *g)
{
QVector<double> mGenes;
QVector<double> fGenes;
for(unsigned int i = 0; i < g->fatherGenome.chromosomes.size(); i++)
{
//std::cout <<"ch"<<(i+1)<<":";
const std::vector<Gene> genesF = g->fatherGenome.chromosomes.at(i).getGenesAsVector();
const std::vector<Gene> genesM = g->motherGenome.chromosomes.at(i).getGenesAsVector();
Settings::geneName.clear();
for(unsigned int j = 0; j < genesF.size(); j++){
//std::cout<<"\t";
//std::cout<<genesF.at(j).getName();//<<", ";
Settings::geneName.push_back(genesF.at(j).getName());
if(genesF.at(j).getGeneType() == Gene::Continious){
//std::cout<<"\t"<<genesF.at(j).getGeneValueCont() <<" " << genesM.at(j).getGeneValueCont() << std::endl;//<<"\t";
//std::cout<<"\t"<< genesM.at(j).getGeneValueCont() << std::endl;//<<"\t";
if (genesM.at(j).getGeneValueCont() < 0)
{
double val = genesM.at(j).getGeneValueCont() * (-1);
mGenes.push_back(val);
}
else
{
mGenes.push_back(genesM.at(j).getGeneValueCont());
}
if (genesF.at(j).getGeneValueCont() < 0)
{
double val = genesF.at(j).getGeneValueCont() * (-1);
fGenes.push_back(val);
}
else
{
fGenes.push_back(genesF.at(j).getGeneValueCont());
}
}
else{
//std::cout<<"\t"<<genesF.at(j).getGeneValueDiscr();//<<"\t";
//std::cout<<"\t"<<genesM.at(j).getGeneValueDiscr();//<<"\t";
mGenes.push_back(genesM.at(j).getGeneValueDiscr());
fGenes.push_back(genesF.at(j).getGeneValueDiscr());
}
//std::cout<<"\t";
}
}
Settings::malesGene.push_back(mGenes);
Settings::femalesGene.push_back(fGenes);
}
void Processor::evolution(int generations)
{
for(int i = 0; i < generations; i++)
{
popul->breedAll();
}
//Settings::malesGene.clear();
//Settings::femalesGene.clear();
std::stringstream ss;
//ss<<"generation."<<(i)<<".xls";
std::ofstream genFile(ss.str().c_str());
popul->putGeneticStatisticsToStream(genFile);
// for(int i = 0; i < 10; i++)
// {
// std::cout << Processor::individs.at(i)->getGenotype() << std::endl;
// fillVectors(individs.at(i)->getGenotype());
// }
}
/////////////////////////////////////////////////////
void Processor::testInOutBreeding02(){
std::ofstream statFile("statFile.txt");
std::string stat;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int maxGenerations = Settings::Iterations;
long initPopSize = Settings::InitPopSize;
float ratioBetweenPops = Settings::InitRatioBetweenPops;
long int maxIndivids = Settings::KMaxParameter;
Position3D<double> position(0, 0, 0, 1000, 1000, 1000);
Region region(position, maxIndivids);
qsrand(0);
int RANGE = 1000;
int PRECISION = 10;
float gValue;
std::vector<Individual*> individs;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD> 1
for(int i = 0; i < initPopSize*ratioBetweenPops; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD>
std::vector<Chromosome> fGenome;
std::vector<Chromosome> mGenome;
std::vector<Chromosome> chroms;
for(int j = 0; j < 2; j++){
// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
RANGE = 10;
gValue = (float)(rand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF1(Gene::Continious, "A coadaptive", gValue);
gValue = (float)(rand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF2(Gene::Continious, "B coadaptive", gValue);
RANGE = 2;
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF3(Gene::Continious, "C disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF4(Gene::Continious, "D disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF5(Gene::Continious, "E disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF6(Gene::Continious, "F disease", gValue);
Chromosome chromF("Chrom 1"); // <20><><EFBFBD><EFBFBD> / <20><><EFBFBD><EFBFBD>
chromF.insertGeneToEnd(geneF1);
chromF.insertGeneToEnd(geneF2);
chromF.insertGeneToEnd(geneF3);
chromF.insertGeneToEnd(geneF4);
chromF.insertGeneToEnd(geneF5);
chromF.insertGeneToEnd(geneF6);
chroms.push_back(chromF);
} // (END) for(int i = 0; i < 2; i++)
fGenome.push_back(chroms.at(0));
mGenome.push_back(chroms.at(1));
Genotype* genotype = new Genotype(fGenome, mGenome);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Trait trait1(Trait::Continious, "coadaptive", 0.0f);
Trait trait2(Trait::Continious, "disease", 0.0f);
Phenotype* phenotype = new Phenotype(trait1);
phenotype->addTrait(trait2);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Individual* newInd = new Individual(genotype, phenotype, 0, Individual::hermaphrodite, 0);
newInd->setGenToPhenStrategy(GenotypeToPhenotypeStrategies::getInstance("inoutbreeding"));
individs.push_back(newInd);
} // (END) for(int i = 0; i < size; i++)
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD> 2
for(int i = 0; i < initPopSize; i++){
//std::cout << i << std::endl;
// <20><><EFBFBD><EFBFBD><EFBFBD>
std::vector<Chromosome> fGenome;
std::vector<Chromosome> mGenome;
std::vector<Chromosome> chroms;
for(int j = 0; j < 2; j++){
// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
RANGE = 10;
gValue = -(float)(rand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF1(Gene::Continious, "A coadaptive", gValue);
gValue = -(float)(rand()%(RANGE*PRECISION+1))/PRECISION;
Gene geneF2(Gene::Continious, "B coadaptive", gValue);
PRECISION=1;
RANGE = 2;
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF3(Gene::Continious, "C disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF4(Gene::Continious, "D disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF5(Gene::Continious, "E disease", gValue);
gValue = (rand()%(RANGE*PRECISION + 1)) / (float) RANGE / PRECISION;
Gene geneF6(Gene::Continious, "F disease", gValue);
Chromosome chromF("Chrom 1"); // <20><><EFBFBD><EFBFBD> / <20><><EFBFBD><EFBFBD>
chromF.insertGeneToEnd(geneF1);
chromF.insertGeneToEnd(geneF2);
chromF.insertGeneToEnd(geneF3);
chromF.insertGeneToEnd(geneF4);
chromF.insertGeneToEnd(geneF5);
chromF.insertGeneToEnd(geneF6);
chroms.push_back(chromF);
} // (END) for(int i = 0; i < 2; i++)
fGenome.push_back(chroms.at(0));
mGenome.push_back(chroms.at(1));
Genotype* genotype = new Genotype(fGenome, mGenome);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD>
fillVectors(genotype);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Trait trait1(Trait::Continious, "coadaptive", 0.0f);
Trait trait2(Trait::Continious, "disease", 0.0f);
Phenotype* phenotype = new Phenotype(trait1);
phenotype->addTrait(trait2);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Individual* newInd = new Individual(genotype, phenotype, 0, Individual::hermaphrodite, 0);
newInd->setGenToPhenStrategy(GenotypeToPhenotypeStrategies::getInstance("inoutbreeding"));
individs.push_back(newInd);
} // (END) for(int i = 0; i < size; i++)
//popul = new AsexualPopulation(Processor::individs);
AsexualPopulation population(individs);
population.setBreedingStrategy(PopulationBreedingStrategy::getInstance("inoutbreeding"));
population.setRegion(&region);
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
for(int i = 0; i < maxGenerations; i++){
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
population.breedAll();
// std::stringstream ss;
// std::ofstream genFile(ss.str().c_str());
// population.putGeneticStatisticsToStream(genFile);
//--- <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> ---
stat = population.getSatistics();
statFile<<stat<<std::endl;
if(Settings::WRITE_FULL_STATISTICS_TO_FILE){
std::stringstream ss;
std::stringstream ss2;
std::stringstream ss3;
ss<<"generation."<<(i)<<".xls";
ss2<<"generation."<<(i)<<".txt";
ss3<<"gmaxAB."<<(i)<<".txt";
std::ofstream genFile(ss.str().c_str());
std::ofstream genFile2(ss2.str().c_str());
std::ofstream genFile3(ss3.str().c_str());
population.putGeneticStatisticsToStream(genFile);
population.putGeneticSimpleStatisticsToStream(genFile2);
population.putGeneticMaxModuleStatisticsToStream(genFile3);
genFile.close();
genFile2.close();
genFile3.close();
}
//------------------
}
statFile.close();
//Settings::malesGene.clear();
//Settings::femalesGene.clear();
//std::stringstream ss;
//ss<<"generation."<<(i)<<".xls";
//std::ofstream genFile(ss.str().c_str());
//population.putGeneticStatisticsToStream(genFile);
// for(int i = 0; i < individs.size(); i++)
// {
// std::cout <<"iterate" << i << std::endl;
// //fillVectors(individs.at(i)->getGenotype());
// std::cout <<"iterate after " << i << std::endl;
// }
}