Init version

processor/Settings.h

@@ -0,0 +1,45 @@
+#pragma once
+#include <string>
+
+class Settings {
+public:
+	static bool WRITE_FULL_STATISTICS_TO_FILE;
+	
+	static int Iterations;
+	static long int	InitPopSize;
+	static float InitRatioBetweenPops;
+
+	// Common breeding strategies parameters
+	static double BirthRate;
+	static double NaturalDeathRate;
+
+	// Verhulst breeding strategy default parameters
+	static long int KMaxParameter;	// r*X*(1 - X/KMax)
+
+	// Inbreeding/Outbreeding model parameters
+	static int OffspringsMean;
+	static float CoadaptiveThreshold;
+	static float CoadaptiveMinimumP;
+	static float CoadaptiveMaximumTrait;
+	static float DiseaseThreshold;
+	static std::string CoadaptiveGenesInteraction;
+	static std::string DiseaseGenesInteraction;
+
+	static std::string BreedingStrategy;
+	static std::string GenToPhenStrategy;
+	static std::string PhenToFitStrategy;
+	static std::string RecombinationStrategy;
+
+	static double ProbMtDNARecomb;
+	static int PopulationHomoInitSize;
+	static int PopulationAncientInitSize;
+	static double migrationPartHomoToAncient;
+	static double migrationPartAncientToHomo;
+	static int generationsPerMigration;
+	static int locusLength;
+	static double percentDiffLoci;
+	static int numLoci;
+
+public:	
+	static void initScript(std::string fileName);
+};