#include "AbstractIndividual.h"
#include "genome/strategies/GenotypeToPhenotypeStrategy.h"
#include <iostream>

Individual::Individual(const Individual& father, const Individual& mother)
{
	this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
	this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
	this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");

	genotype = new Genotype(
		father.getGenotype().recombinantHaploidGenotype(recombinationStrategy),
		mother.getGenotype().recombinantHaploidGenotype(recombinationStrategy));
	// Можно сделать рекомбинационные стратегии папы и мамы разные

	// Субстратный кэш доделать
	this->substrateCache = new InnerSubstratesPool();

	phenotype= new Phenotype(father.getPhenotype());
	this->age = 0;
	this->calculateFitness();
	
}

Individual::Individual(Genotype* gType, Phenotype* pType, InnerSubstratesPool* sub, Gender _gender, Region* _reg):
genotype(gType), phenotype(pType), substrateCache(sub), 
gender(_gender), region(_reg)
{
	this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
	this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
	this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");
	
	this->age = 0;

	//this->calculateFitness();
	//this->phenotype
}


Individual::~Individual(){
//	std::cerr<<"Destructor works"<<std::endl;
	delete this->genotype;
	delete this->phenotype;

	delete this->genToPhenStrategy;
	delete this->phenToFitStrategy;
	delete this->recombinationStrategy;

	if(this->substrateCache != 0)
		delete this->substrateCache;
}

/*bool compareOnFitness(const Individual& a, const Individual& b){
	return a.getFitness() < b.getFitness();
}*/

bool compareOnFitness(const Individual* a, const Individual* b){
	return a->getFitness() < b->getFitness();
}

void Individual::calculateFitness(){
	this->genToPhenStrategy->calculatePhenotype(this);
	this->fitness = this->phenToFitStrategy->calculateFitness(this->phenotype);
}

void Individual::calculatePhenotype(){
	this->genToPhenStrategy->calculatePhenotype(this);
}