#pragma once
#include <string>
#include <QVector>
#include "DEC-0.0/population/Population.h"

class Settings {
public:
	static bool WRITE_FULL_STATISTICS_TO_FILE;
	
	static int Iterations;
	static long int	InitPopSize;
	static float InitRatioBetweenPops;

	// Common breeding strategies parameters
	static double BirthRate;
	static double NaturalDeathRate;

	// Verhulst breeding strategy default parameters
	static long int KMaxParameter;	// r*X*(1 - X/KMax)

	// Inbreeding/Outbreeding model parameters
	static int OffspringsMean;
	static float CoadaptiveThreshold;
	static float CoadaptiveMinimumP;
	static float CoadaptiveMaximumTrait;
	static float DiseaseThreshold;
	static std::string CoadaptiveGenesInteraction;
	static std::string DiseaseGenesInteraction;

	static std::string BreedingStrategy;
	static std::string GenToPhenStrategy;
	static std::string PhenToFitStrategy;
	static std::string RecombinationStrategy;

	static double ProbMtDNARecomb;
	static int PopulationHomoInitSize;
	static int PopulationAncientInitSize;
	static double migrationPartHomoToAncient;
	static double migrationPartAncientToHomo;
	static int generationsPerMigration;
	static int locusLength;
	static double percentDiffLoci;
	static int numLoci;

    static QVector<double> generations;
    static QVector<double> ancientCommonSize;
    static QVector<double> homoCommonSize;
    static QVector<double> ancientMaleSize;
    static QVector<double> ancientFemaleSize;
    static QVector<double> homoMaleSize;
    static QVector<double> homoFemaleSize;
    static int globalGenerations;
    static int maxYval;
    static int minYval;

    static std::vector<std::string> initMtDNA;
    static std::vector<std::string> initMtDNA_ancient;
    static std::vector<std::string> calcScript;

    static QVector<QVector<double> > malesGene;
    static QVector<QVector<double> > femalesGene;
    static QVector<std::string> geneName;


public:	
	static void initScript(std::string fileName);
    static void initGUIvect();
    static void fillVectors(BisexualPopulation* pop_Sapiens, BisexualPopulation* pop_Ancient);
};