68 lines
2.2 KiB
C++
68 lines
2.2 KiB
C++
#include "AbstractIndividual.h"
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#include "genome/strategies/GenotypeToPhenotypeStrategy.h"
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#include <iostream>
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Individual::Individual(const Individual& father, const Individual& mother)
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{
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this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
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this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
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this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");
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genotype = new Genotype(
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father.getGenotype().recombinantHaploidGenotype(recombinationStrategy),
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mother.getGenotype().recombinantHaploidGenotype(recombinationStrategy));
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// Ìîæíî ñäåëàòü ðåêîìáèíàöèîííûå ñòðàòåãèè ïàïû è ìàìû ðàçíûå
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// Ñóáñòðàòíûé êýø äîäåëàòü
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this->substrateCache = new InnerSubstratesPool();
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phenotype= new Phenotype(father.getPhenotype());
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this->age = 0;
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this->calculateFitness();
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}
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Individual::Individual(Genotype* gType, Phenotype* pType, InnerSubstratesPool* sub, Gender _gender, Region* _reg):
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genotype(gType), phenotype(pType), substrateCache(sub),
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gender(_gender), region(_reg)
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{
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this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
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this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
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this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");
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this->age = 0;
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//this->calculateFitness();
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//this->phenotype
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}
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Individual::~Individual(){
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// std::cerr<<"Destructor works"<<std::endl;
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delete this->genotype;
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delete this->phenotype;
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//delete this->genToPhenStrategy;
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//delete this->phenToFitStrategy;
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//delete this->recombinationStrategy;
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if(this->substrateCache != 0)
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delete this->substrateCache;
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}
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/*bool compareOnFitness(const Individual& a, const Individual& b){
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return a.getFitness() < b.getFitness();
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}*/
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bool compareOnFitness(const Individual* a, const Individual* b){
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return a->getFitness() < b->getFitness();
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}
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void Individual::calculateFitness(){
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this->genToPhenStrategy->calculatePhenotype(this);
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this->fitness = this->phenToFitStrategy->calculateFitness(this->phenotype);
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}
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void Individual::calculatePhenotype(){
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this->genToPhenStrategy->calculatePhenotype(this);
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} |