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The first Git version

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Sergey Lashin
2018-11-29 17:21:49 +07:00
commit b2faedd28f
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20
Deaf2.0/Deaf2.0.sln Normal file
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Microsoft Visual Studio Solution File, Format Version 12.00
# Visual Studio 2012
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "Deaf2.0", "Deaf2.0\Deaf2.0.vcxproj", "{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}"
EndProject
Global
GlobalSection(SolutionConfigurationPlatforms) = preSolution
Debug|Win32 = Debug|Win32
Release|Win32 = Release|Win32
EndGlobalSection
GlobalSection(ProjectConfigurationPlatforms) = postSolution
{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}.Debug|Win32.ActiveCfg = Debug|Win32
{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}.Debug|Win32.Build.0 = Debug|Win32
{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}.Release|Win32.ActiveCfg = Release|Win32
{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}.Release|Win32.Build.0 = Release|Win32
EndGlobalSection
GlobalSection(SolutionProperties) = preSolution
HideSolutionNode = FALSE
EndGlobalSection
EndGlobal

63
Deaf2.0/Deaf2.0/Agent.cpp Normal file
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#include "Agent.h"
#include "Settings.h"
#include <random>
Agent::Agent(int fGene, int mGene, bool deaf, bool signL, float socialP){
this->mGenome.assign(1, mGene);
this->fGenome.assign(1, fGene);
this->isDeaf = deaf;
this->knowsSignLanguage = signL;
this->socialPosition = socialP;
// this->bachelority = bachelority;
this->fatherID = -1;
this->motherID = -1;
this->alreadyMarried = false;
}
Agent::Agent(Agent* father, int fID, Agent* mother, int mID){
this->fatherID = fID;
this->motherID = mID;
std::default_random_engine& generator = Settings::RANDOM_GENERATOR;
std::uniform_int_distribution<int> distribution(0,1); // ERROR - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
int mAllele = distribution(generator);
int fAllele = distribution(generator);
// <20><><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
this->mGenome = (mAllele == 0 ? mother->mGenome : mother->fGenome);
this->fGenome = (fAllele == 0 ? father->mGenome : father->fGenome);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>: <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
this->isDeaf = (this->mGenome.at(0) + this->fGenome.at(0)) > 1 ? true : false;
if(!this->isDeaf)
{
std::uniform_real_distribution<float> distributionR(0.f,1.f);
float deafChance = distributionR(generator);
if(deafChance < Settings::SPONTANEOUS_DEAF)
this->isDeaf = true;
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>.
// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>, <20><><EFBFBD> <20><><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>, <20><> <20><><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><>
// (<28><><EFBFBD><EFBFBD> <20> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
// 2018.11.20 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
//this->knowsSignLanguage = (father->knowsSignLanguage && father->isDeaf
// || mother->knowsSignLanguage && mother->isDeaf);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>)
// <20><><EFBFBD><EFBFBD>: <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::normal_distribution<float> distrN(0,0.1f);
float delta = distrN(generator);
this->socialPosition = 0.5f*(mother->socialPosition + father->socialPosition) + delta;
this->alreadyMarried = false;
// <20><><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// delta = distribution(generator);
// this->bachelority = 0.5f*(mother->bachelority + father->bachelority) + delta;
// this->age = 0;
}

36
Deaf2.0/Deaf2.0/Agent.h Normal file
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#pragma once
#include<vector>
class Agent{
protected:
std::vector<int> mGenome;
std::vector<int> fGenome;
bool isDeaf;
bool knowsSignLanguage;
float socialPosition;
// float bachelority;
int fatherID;
int motherID;
// int age;
// Agent* mate;
// Agent* father;
// Agent* mother;
// std::vector<Agent*> children;
public:
Agent(int fGene, int mGene, bool deaf, bool signL,
float socialP); // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Agent(Agent*,int, Agent*, int);
bool deaf() const { return isDeaf;}
int getDeafAllelesCount() const { return mGenome.at(0)+fGenome.at(0);}
bool knowsSign() const { return knowsSignLanguage;}
int getFatherID() const { return fatherID;}
int getMotherID() const { return motherID;}
float getSocialP() const { return socialPosition;}
void teachSignLanguage() { this->knowsSignLanguage = true;}
bool alreadyMarried;
};

83
Deaf2.0/Deaf2.0/Deaf2.0.vcxproj Normal file
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<?xml version="1.0" encoding="utf-8"?>
<Project DefaultTargets="Build" ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
<ItemGroup Label="ProjectConfigurations">
<ProjectConfiguration Include="Debug|Win32">
<Configuration>Debug</Configuration>
<Platform>Win32</Platform>
</ProjectConfiguration>
<ProjectConfiguration Include="Release|Win32">
<Configuration>Release</Configuration>
<Platform>Win32</Platform>
</ProjectConfiguration>
</ItemGroup>
<PropertyGroup Label="Globals">
<ProjectGuid>{532A4CEC-F8E9-467D-A01E-2E4D814E0D3F}</ProjectGuid>
<RootNamespace>Deaf20</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseDebugLibraries>true</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseDebugLibraries>false</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<WholeProgramOptimization>true</WholeProgramOptimization>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
<ImportGroup Label="ExtensionSettings">
</ImportGroup>
<ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
<PropertyGroup />
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<ClCompile>
<WarningLevel>Level3</WarningLevel>
<Optimization>Disabled</Optimization>
<SDLCheck>true</SDLCheck>
<AdditionalIncludeDirectories>E:\Programming\boost_1_66_0;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
</ClCompile>
<Link>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
<WarningLevel>Level3</WarningLevel>
<Optimization>MaxSpeed</Optimization>
<FunctionLevelLinking>true</FunctionLevelLinking>
<IntrinsicFunctions>true</IntrinsicFunctions>
<SDLCheck>true</SDLCheck>
<AdditionalIncludeDirectories>E:\Programming\boost_1_66_0;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
</ClCompile>
<Link>
<GenerateDebugInformation>true</GenerateDebugInformation>
<EnableCOMDATFolding>true</EnableCOMDATFolding>
<OptimizeReferences>true</OptimizeReferences>
<AdditionalLibraryDirectories>E:\Programming\boost_1_66_0\lib32-msvc-11.0;E:\Programming\boost_1_66_0\libs;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
</Link>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="Agent.cpp" />
<ClCompile Include="Main.cpp" />
<ClCompile Include="Processor.cpp" />
<ClCompile Include="Settings.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="Agent.h" />
<ClInclude Include="Processor.h" />
<ClInclude Include="Settings.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
</ImportGroup>
</Project>

15
Deaf2.0/Deaf2.0/Main.cpp Normal file
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#include "Processor.h"
#include <iostream>
int main(int argc, char** argv){
std::string filename = "";
if(argc >= 2)
filename = argv[1];
Processor p;
p.run(filename);
return 0;
}

734
Deaf2.0/Deaf2.0/Processor.cpp Normal file
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#include "Agent.h"
#include "Processor.h"
#include "Settings.h"
#include <random>
#include <ctime>
#include <algorithm>
#include <fstream>
#include <iostream>
#include <boost/algorithm/string.hpp>
#include <boost/tokenizer.hpp>
#include <boost/math/distributions/beta.hpp>
#include <boost/random/random_device.hpp>
#include <boost/random/uniform_real_distribution.hpp>
#ifdef LINUX
#define sscanf_s scanf
#endif
void Processor::run(std::string fileName){
if(fileName.size() > 1){
this->initSettings(fileName);
}
else{
//this->initSettings("D:/Projects/Deaf2.5/Deaf2.0/INIT.txt");
//Settings::OUTPUT_FILE = "D:/model/Deaf2.0 by Sergey 06.08/OUTPUT/output.deaf25.txt";
}
int initPopSizeM = Settings::INIT_POP_SIZE_M;
int initPopSizeW = Settings::INIT_POP_SIZE_W;
///float deafAlleleRatio = Settings::DEAF_ALLELE_RATIO;
float birthRateH = Settings::BIRTH_RATE_H; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
float birthRateD = Settings::BIRTH_RATE_D; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int maxGenerations = Settings::MAX_GENERATIONS;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Initializing output file..\t";
std::ofstream outputFile(Settings::OUTPUT_FILE);
outputFile<<"Generation\tTotalPopulation\tMen\tWomen\tDeaf";
outputFile<<"\tDD marriages\tDD children";
outputFile<<"\tDH marriages\tDH children";
outputFile<<"\tHH marriages\tHH children";
outputFile<<"\tDA frequency\tDA homozygotes frequency";
// TODO <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>, <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
outputFile<<std::endl;
std::cout<<"Done\n";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
//std::vector<std::vector<float> > matrixCurrent;
//std::vector<std::vector<float> > matrixFuture;
std::vector<Agent*> men;
std::vector<Agent*> women;
std::vector<Agent*> newMen;
std::vector<Agent*> newWomen;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20> <20><><EFBFBD>
std::vector<Agent*> deafMen;
std::vector<Agent*> deafWomen;
std::vector<Agent*> deafNewMen;
std::vector<Agent*> deafNewWomen;
std::default_random_engine& generator = Settings::RANDOM_GENERATOR;
//generator.seed(std::time(0));
//RandomDevice::RandomDevice(unsigned long n) : rand_seed(n), engine(n){ }
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Creating men..("<<initPopSizeM<<")\t";
int deafHomozygotes = (int) (initPopSizeM*Settings::DEAF_HOMOZYGOTES);
int hearHomozygotes = (int) (initPopSizeM*Settings::HEAR_HOMOZYGOTES);
int heterozygores = initPopSizeM - deafHomozygotes - hearHomozygotes;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
for(int i = 0; i < hearHomozygotes; i++){
bool isDeaf = false;
int alleleFather = 0;
int alleleMother = 0;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::uniform_real_distribution<float> distrUI(0.f,1.f);
if(distrUI(generator) < Settings::SPONTANEOUS_DEAF)
isDeaf = true;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
men.push_back(a);
if(isDeaf)
deafMen.push_back(a);
} // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
for(int i = 0; i < heterozygores; i++){
bool isDeaf = false;
int alleleFather = 1; // TODO: <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int alleleMother = 0;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::uniform_real_distribution<float> distrUI(0.f,1.f);
if(distrUI(generator) < Settings::SPONTANEOUS_DEAF)
isDeaf = true;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
men.push_back(a);
if(isDeaf)
deafMen.push_back(a);
} // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < deafHomozygotes; i++){
bool isDeaf = true;
int alleleFather = 1;
int alleleMother = 1;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
std::uniform_real_distribution<float> distrUI(0.f,1.f);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
men.push_back(a);
if(isDeaf)
deafMen.push_back(a);
}// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::random_shuffle(men.begin(), men.end());
std::random_shuffle(deafMen.begin(), deafMen.end());
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Done\n";
std::cout<<"Creating women..\t";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
deafHomozygotes = (int) (initPopSizeW*Settings::DEAF_HOMOZYGOTES);
hearHomozygotes = (int) (initPopSizeW*Settings::HEAR_HOMOZYGOTES);
heterozygores = initPopSizeW - deafHomozygotes - hearHomozygotes;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
for(int i = 0; i < hearHomozygotes; i++){
bool isDeaf = false;
int alleleFather = 0;
int alleleMother = 0;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::uniform_real_distribution<float> distrUI(0.f,1.f);
if(distrUI(generator) < Settings::SPONTANEOUS_DEAF)
isDeaf = true;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
women.push_back(a);
if(isDeaf)
deafWomen.push_back(a);
} // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> (<28> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
for(int i = 0; i < heterozygores; i++){
bool isDeaf = false;
int alleleFather = 1; // TODO: <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int alleleMother = 0;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::uniform_real_distribution<float> distrUI(0.f,1.f);
if(distrUI(generator) < Settings::SPONTANEOUS_DEAF)
isDeaf = true;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
women.push_back(a);
if(isDeaf)
deafWomen.push_back(a);
} // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < deafHomozygotes; i++){
bool isDeaf = true;
int alleleFather = 1;
int alleleMother = 1;
float mean = isDeaf ? Settings::SOCIAL_MEAN_D : Settings::SOCIAL_MEAN_H;
float sigma= isDeaf ? Settings::SOCIAL_VAR_D : Settings::SOCIAL_VAR_H;
std::normal_distribution<float> distN(mean, sigma);
float socialP = distN(generator);
std::uniform_real_distribution<float> distrUI(0.f,1.f);
float signLangLevel = isDeaf ? Settings::SIGN_LANG_DEAF : Settings::SIGN_LANG_HEAR;
bool signL = distrUI(generator) < signLangLevel ? true: false;
Agent* a = new Agent(alleleFather, alleleMother, isDeaf, signL, socialP);
women.push_back(a);
if(isDeaf)
deafWomen.push_back(a);
}// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::random_shuffle(women.begin(), women.end());
std::random_shuffle(deafWomen.begin(), deafWomen.end());
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Done\n";
std::cout<<"\nMain cycle\n";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
for(int gen = 0; gen < maxGenerations; gen++){
std::cout<<"Generation\t"<<gen<<"\n";
int marriageDD = 0;
int marriageDH = 0;
int marriageHH = 0;
int childrenDD = 0;
int childrenDH = 0;
int childrenHH = 0;
//std::cout<<"\tInitializing matrixCurrent\t";
//std::vector<float> vect(women.size(),0.0f);
//matrixCurrent.assign(men.size(),vect);
//std::cout<<"\tDone\n";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD> <<3C><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>, <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>>
std::cout<<"\tInitializing settledPairs\t";
std::uniform_real_distribution<float> distrUI(0.f,1.f);
std::cout<<".";
std::vector<std::vector<std::pair<unsigned int,float> > > settledPairs(men.size());
std::cout<<".";
for(int i = 0; i < settledPairs.size(); i++){
float f = distrUI(generator);
int sign = f < 0.5f ? -1 : 1;
int candidatePairs = Settings::CANDIDATE_PAIRS_MEAN
+ (int)(sign*f*Settings::CANDIDATE_PAIRS_VAR);
// TODO: <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
int left = i - candidatePairs/2;
int right = i + candidatePairs/2;
// HACK: 2018/11/23 <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
if(men.at(i)->deaf() && Settings::DEAF_COMMUNITY_MODEL == 1){
left = 0;
right = women.size() - 1;
candidatePairs = women.size();
}
if(left < 0){
right -= left;
left = 0;
}
if(right >= women.size()){
right = women.size() - 1;
left = right - candidatePairs;
}
std::vector<std::pair<unsigned int,float> > pairs(candidatePairs);
for(unsigned int p = 0; p < pairs.size(); p++){
pairs.at(p).first = left;
// <20><><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>-<2D><><EFBFBD><EFBFBD><EFBFBD>
//matrixCurrent.at(i).at(left)
pairs.at(p).second = esteem(men.at(i),women.at(left));
left++;
}
settledPairs.at(i) = pairs;
}
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Done\n";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
/*for(unsigned int m = 0; m < men.size(); m++){
// <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(unsigned int w = 0; w < women.size(); w++){
if(matrixCurrent.at(m).at(w) >= 0.0f)
matrixCurrent.at(m).at(w) = esteem(men.at(m),women.at(w));
}
} */
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
/* std::cout<<"\tGenerating offsprings\t";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>, <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout << "MENS" << std::endl;
for (auto m = 0; m < settledPairs.size(); ++m)
{
std::cout << "MEN: " << m << ": ";
for (auto w = 0; w < settledPairs[m].size(); ++w)
{
std::cout << settledPairs[m][w].first << " : " << settledPairs[m][w].second << "; ";
}
std::cout << std::endl;
}
*/
for(int m = 0; m < men.size(); m++){
// <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int bestW = 0;
float bestScore = 0.0f;
/* <20><><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int w = 0; w < women.size(); w++){
if(matrixCurrent.at(m).at(w) > bestScore){
bestScore = matrixCurrent.at(m).at(w);
bestW = w;
}
} // <20><><EFBFBD><EFBFBD><EFBFBD>
**/
// <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(unsigned int p = 0; p < settledPairs.at(m).size(); p++){
unsigned int w = settledPairs.at(m).at(p).first;
if(women.at(w)->alreadyMarried)
continue;
if(settledPairs.at(m).at(p).second/*matrixCurrent.at(m).at(w)*/ > bestScore){
bestScore = settledPairs.at(m).at(p).second; //matrixCurrent.at(m).at(w);
bestW = w;
}
}
// (END) <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
if(bestScore <= 0.0f)
continue; // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>, <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
int* mariage = &marriageHH;
int* childrenType = &childrenHH;
float meanChildren = birthRateH;
if((men.at(m)->deaf() && !women.at(bestW)->deaf()) ||
(!men.at(m)->deaf() && women.at(bestW)->deaf())){
mariage = &marriageDH;
childrenType = &childrenDH;
}
if(men.at(m)->deaf() && women.at(bestW)->deaf()){
mariage = &marriageDD;
childrenType = &childrenDD;
}
if(men.at(m)->deaf() || women.at(bestW)->deaf()){
meanChildren = birthRateD;
}
float correction = (Settings::BETA_A+Settings::BETA_B)/Settings::BETA_A*meanChildren;
float fChildren = 1.0f;
#ifndef LINUX
std::_Beta_distribution<float> distrB(Settings::BETA_A,Settings::BETA_B);
fChildren = distrB(generator)*correction; //
#endif
#ifdef LINUX
boost::random::random_device rng;
boost::random::uniform_real_distribution<> uniform(0,1);
boost::math::beta_distribution<> distrB(Settings::BETA_A,Settings::BETA_B);
fChildren = quantile(distrB, uniform(rng)) * correction;
#endif
int children = (int) std::floor(fChildren+0.5f);
(*mariage)++;
(*childrenType) += children;
// TODO: <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> + <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
std::vector<Agent*> newSibs; // <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
std::vector<Agent*> deafSibs;// <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < children; i++){
Agent* newAgent = new Agent(men.at(m), m, women.at(bestW), bestW);
newSibs.push_back(newAgent);
if(newAgent->deaf()){
deafSibs.push_back(newAgent);
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::uniform_int_distribution<int> distrUI(0,1);
if(distrUI(generator) == 0){
newMen.push_back(newAgent);
}
else{
newWomen.push_back(newAgent);
}
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 1 - <20><><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD>-<2D><> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
if(men.at(m)->deaf() || women.at(bestW)->deaf()){
if(men.at(m)->knowsSign() || women.at(bestW)->knowsSign()){
for(auto i = 0; i < newSibs.size(); i++){
newSibs.at(i)->teachSignLanguage();
}
}
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 2 - <20><><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
else if(deafSibs.size() > 0){
std::uniform_real_distribution<float> distrUF(0.f,1.f);
// <20>) <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
bool sibsKnowSL = false;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(auto i = 0; i < deafSibs.size(); i++){
if(distrUF(generator) <= Settings::SIGN_LANG_DEAF){
deafSibs.at(i)->teachSignLanguage();
sibsKnowSL = true;
}
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(auto i = 0; i < newSibs.size(); i++){
if(!newSibs.at(i)->deaf() && distrUF(generator) <= Settings::SIGN_LANG_HEAR){
newSibs.at(i)->teachSignLanguage();
sibsKnowSL = true;
}
}
// <20>) <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
if(men.at(m)->knowsSign() || women.at(bestW)->knowsSign() || sibsKnowSL){
for(auto i = 0; i < newSibs.size(); i++){
newSibs.at(i)->teachSignLanguage();
}
}
}
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 3 - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
else {
std::uniform_real_distribution<float> distrUF(0.f,1.f);
for(auto i = 0; i < newSibs.size(); i++){
if(distrUF(generator) <= Settings::SIGN_LANG_HEAR){
newSibs.at(i)->teachSignLanguage();
}
}
}
// (END) <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
women.at(bestW)->alreadyMarried = true;
//for(int i = m; i < men.size(); i++){
// matrixCurrent.at(i).at(bestW) = -100.0f;
//}
} // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
std::cout<<"Done\n";
std::cout<<"\tSaving model state\t";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
int totalP = men.size()+women.size();
outputFile<<gen;
outputFile<<"\t"<<totalP;
outputFile<<"\t"<<men.size();
outputFile<<"\t"<<women.size();
int totalDeaf = 0;
for(auto i = 0; i < men.size(); i++){
if(men.at(i)->deaf())
totalDeaf++;
}
for(auto i = 0; i < women.size(); i++){
if(women.at(i)->deaf())
totalDeaf++;
}
outputFile<<"\t"<<totalDeaf;
int sumMarriages = marriageDD + marriageDH + marriageHH;
int sumChildren = newMen.size() + newWomen.size();
outputFile<<"\t"<<float(marriageDD)/sumMarriages;
outputFile<<"\t"<<float(childrenDD)/sumChildren;
outputFile<<"\t"<<float(marriageDH)/sumMarriages;
outputFile<<"\t"<<float(childrenDH)/sumChildren;
outputFile<<"\t"<<float(marriageHH)/sumMarriages;
outputFile<<"\t"<<float(childrenHH)/sumChildren;
int deafAllelesTotal = 0;
int deafHomoz = 0;
for(unsigned int i = 0; i< men.size(); i++){
int deafAlleles = men.at(i)->getDeafAllelesCount();
deafAllelesTotal += deafAlleles;
//int increase = deafAllelesTotal == 2 ? 1 : 0;
deafHomoz += deafAlleles/2;
}
for(unsigned int i = 0; i< women.size(); i++){
int deafAlleles = women.at(i)->getDeafAllelesCount();
deafAllelesTotal += deafAlleles;
//int increase = deafAllelesTotal == 2 ? 1 : 0;
deafHomoz += deafAlleles/2;
}
outputFile<<"\t"<<float(deafAllelesTotal)/(2*totalP);
outputFile<<"\t"<<float(deafHomoz)/totalP;
/*
outputFile<<"\tDA frequency\tDA homozygotes frequency";
*/
outputFile<<"\n";
std::cout<<"Done\n";
std::cout<<"\tDeleting old agents\t";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < men.size(); i++){
delete men.at(i);
}
for(int i = 0; i < women.size(); i++){
delete women.at(i);
}
std::cout<<"Done\n";
std::cout<<"\tReplacing old by new and shuffling\t";
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
men = newMen;
women = newWomen;
std::random_shuffle(men.begin(), men.end());
std::random_shuffle(women.begin(), women.end());
std::cout<<"Done\n";
std::cout<<"\tClearing\t";
newMen.clear();
newWomen.clear();
std::cout<<"Done\n";
} // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>
outputFile.close();
}
float Processor::esteem(Agent* man, Agent* woman){
float ans = 0.0f;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD>-<2D><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
if( (man->getFatherID() == woman->getFatherID() ||
man->getMotherID() == woman->getMotherID()) && woman->getMotherID() != -1){
return -50.f;
}
if(man->deaf() == woman->deaf()){
if(man->deaf()){
ans += 2*Settings::WEIGHT_PHENO_D;
float sum1 = man->knowsSign() ? Settings::WEIGHT_SIGN_D : 0;
float sum2 = woman->knowsSign() ? Settings::WEIGHT_SIGN_D : 0;
ans += sum1+sum2;
}
else{
ans += 2*Settings::WEIGHT_PHENO_H;
}
}
else{
if(man->knowsSign() && woman->knowsSign()){
ans += Settings::WEIGHT_SIGN_D + Settings::WEIGHT_SIGN_H;
}
}
if(man->getSocialP() + woman->getSocialP() > ans)
return 0.0f;
return ans;
}
void Processor::initSettings(std::string fileName){
std::vector<std::string> script;
// std::ifstream file(fileName.c_str());
// std::string str;
// while(getline(file,str)){
// if(str.length() > 2)
// script.push_back(str);
// }
// file.close();
// process Script
unsigned int curLine;
for(curLine = 0; curLine < script.size(); curLine++){
if(script.at(curLine).at(0) == '/' || script.at(curLine).at(0) == '#')
continue;
std::vector<std::string > tokensVector; // Search for tokens
//boost::split(tokensVector, script.at(curLine), boost::is_any_of("=") );
boost::split(tokensVector, script.at(curLine), std::bind2nd(std::equal_to<char>(), '='));
std::string instr = tokensVector.at(0);
boost::to_lower(instr);
boost::trim(instr);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
if(instr == "generations" || instr == "iterations" ){
int iter = Settings::MAX_GENERATIONS;
sscanf_s(tokensVector.at(1).c_str(),"%d", &iter);
Settings::MAX_GENERATIONS = iter;
}
if(instr == "init_pop_men"){
int pop = Settings::INIT_POP_SIZE_M;
sscanf_s(tokensVector.at(1).c_str(),"%d", &pop);
Settings::INIT_POP_SIZE_M = pop;
}
if(instr == "init_pop_women"){
int pop = Settings::INIT_POP_SIZE_W;
sscanf_s(tokensVector.at(1).c_str(),"%d", &pop);
Settings::INIT_POP_SIZE_W = pop;
}
if(instr == "candidate_pairs_mean"){
int cand = Settings::CANDIDATE_PAIRS_MEAN;
sscanf_s(tokensVector.at(1).c_str(),"%d", &cand);
Settings::CANDIDATE_PAIRS_MEAN = cand;
}
if(instr == "candidate_pairs_var"){
int cand = Settings::CANDIDATE_PAIRS_VAR;
sscanf_s(tokensVector.at(1).c_str(),"%d", &cand);
Settings::CANDIDATE_PAIRS_VAR = cand;
}
else if(instr == "spontaneous_deaf"){
float deaf = Settings::SPONTANEOUS_DEAF;
sscanf_s(tokensVector.at(1).c_str(),"%f", &deaf);
Settings::SPONTANEOUS_DEAF = deaf;
}
else if(instr == "deaf_allele_ratio"){
float deaf = Settings::DEAF_ALLELE_RATIO;
sscanf_s(tokensVector.at(1).c_str(),"%f", &deaf);
Settings::DEAF_ALLELE_RATIO = deaf;
}
else if(instr == "deaf_homozygotes"){
float deaf = Settings::DEAF_HOMOZYGOTES;
sscanf_s(tokensVector.at(1).c_str(),"%f", &deaf);
Settings::DEAF_HOMOZYGOTES = deaf;
}
else if(instr == "hear_homozygotes"){
float hear = Settings::HEAR_HOMOZYGOTES;
sscanf_s(tokensVector.at(1).c_str(),"%f", &hear);
Settings::HEAR_HOMOZYGOTES = hear;
}
else if(instr == "birth_rate_hearing" || instr == "birth_rate_h"){
float rate = Settings::BIRTH_RATE_H;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::BIRTH_RATE_H = rate;
}
else if(instr == "birth_rate_deaf" || instr == "birth_rate_d"){
float rate = Settings::BIRTH_RATE_D;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::BIRTH_RATE_D = rate;
}
else if(instr == "beta_a"){
float rate = Settings::BETA_A;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::BETA_A = rate;
}
else if(instr == "beta_b"){
float rate = Settings::BETA_B;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::BETA_B = rate;
}
else if(instr == "social_mean_h" || instr == "social_mean_hearing"){
float rate = Settings::SOCIAL_MEAN_H;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SOCIAL_MEAN_H = rate;
}
else if(instr == "social_mean_d" || instr == "social_mean_deaf"){
float rate = Settings::SOCIAL_MEAN_D;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SOCIAL_MEAN_D = rate;
}
else if(instr == "social_var_h" || instr == "social_var_hearing"){
float rate = Settings::SOCIAL_VAR_H;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SOCIAL_VAR_H = rate;
}
else if(instr == "social_var_d" || instr == "social_var_deaf"){
float rate = Settings::SOCIAL_VAR_D;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SOCIAL_VAR_D = rate;
}
else if(instr == "weight_phenotype_hearing" || instr == "weight_pheno_h"){
float rate = Settings::WEIGHT_PHENO_H;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::WEIGHT_PHENO_H = rate;
}
else if(instr == "weight_phenotype_deaf" || instr == "weight_pheno_d"){
float rate = Settings::WEIGHT_PHENO_D;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::WEIGHT_PHENO_D = rate;
}
else if(instr == "weight_sign_h" || instr == "weight_sign_hearing"){
float rate = Settings::WEIGHT_SIGN_H;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::WEIGHT_SIGN_H = rate;
}
else if(instr == "weight_sign_d" || instr == "weight_sign_deaf"){
float rate = Settings::WEIGHT_SIGN_D;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::WEIGHT_SIGN_D = rate;
}
else if(instr == "sign_lang_d" || instr == "sign_lang_deaf"){
float rate = Settings::SIGN_LANG_DEAF;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SIGN_LANG_DEAF = rate;
}
else if(instr == "sign_lang_h" || instr == "sign_lang_hear"){
float rate = Settings::SIGN_LANG_HEAR;
sscanf_s(tokensVector.at(1).c_str(),"%f", &rate);
Settings::SIGN_LANG_HEAR = rate;
}
else if(instr == "output" || instr == "output_file"){
std::string file = tokensVector.at(1);
boost::trim(file);
Settings::OUTPUT_FILE = file;
}
/*if(instr == "fullstat"){
int flag = 0;
sscanf_s(tokensVector.at(1).c_str(),"%d", &flag);
if(flag != 0)
Settings::WRITE_FULL_STATISTICS_TO_FILE = true;
}*/
/*else if(instr == "birth" || instr == "birthrate" || instr == "birth_rate" ){
double rate = Settings::BirthRate;
sscanf_s(tokensVector.at(1).c_str(),"%lg", &rate);
Settings::BirthRate = rate;
}*/
} // (END) for(curLine = 0; curLine < script.size(); curLine++)
}

11
Deaf2.0/Deaf2.0/Processor.h Normal file
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@@ -0,0 +1,11 @@
#pragma once
#include "Agent.h"
#include <string>
class Processor{
public:
// Processor();
void run(std::string file = "");
void initSettings(std::string file);
float esteem(Agent*, Agent*);
};

39
Deaf2.0/Deaf2.0/Settings.cpp Normal file
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@@ -0,0 +1,39 @@
#include "Settings.h"
#include <ctime>
int Settings::MAX_GENERATIONS = 10;
int Settings::INIT_POP_SIZE_M = 5000;
int Settings::INIT_POP_SIZE_W = 5000;
int Settings::CANDIDATE_PAIRS_MEAN = 100;
int Settings::CANDIDATE_PAIRS_VAR = 30;
float Settings::SPONTANEOUS_DEAF = 0.001f;
float Settings::DEAF_ALLELE_RATIO = 0.1f;
float Settings::DEAF_HOMOZYGOTES = 0.05f;
float Settings::HEAR_HOMOZYGOTES = 0.65f;
float Settings::BIRTH_RATE_H = 2.3f; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
float Settings::BIRTH_RATE_D = 2.1f; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
float Settings::BETA_A = 2.0f;
float Settings::BETA_B = 5.0f;
float Settings::SOCIAL_MEAN_H = 0.3f;
float Settings::SOCIAL_VAR_H = 0.05f;
float Settings::SOCIAL_MEAN_D = 0.3f;
float Settings::SOCIAL_VAR_D = 0.05f;
float Settings::WEIGHT_PHENO_H = 0.7f;
float Settings::WEIGHT_SIGN_H = 0.3f;
float Settings::WEIGHT_PHENO_D = 0.58f;
float Settings::WEIGHT_SIGN_D = 0.42f;
float Settings::SIGN_LANG_DEAF = 0.8f;
float Settings::SIGN_LANG_HEAR = 0.01f;
std::default_random_engine Settings::RANDOM_GENERATOR(time(0));
int Settings::DEAF_COMMUNITY_MODEL = 1;
std::string Settings::OUTPUT_FILE = "output.deaf2.0.csv";

43
Deaf2.0/Deaf2.0/Settings.h Normal file
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@@ -0,0 +1,43 @@
#pragma once
#include <string>
#include <random>
class Settings{
public:
static int MAX_GENERATIONS;
static int INIT_POP_SIZE_M;
static int INIT_POP_SIZE_W;
static int CANDIDATE_PAIRS_MEAN;
static int CANDIDATE_PAIRS_VAR;
static float SPONTANEOUS_DEAF;
static float DEAF_ALLELE_RATIO;
static float DEAF_HOMOZYGOTES;
static float HEAR_HOMOZYGOTES;
static float BIRTH_RATE_H; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
static float BIRTH_RATE_D; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
static float BETA_A;
static float BETA_B;
static float SOCIAL_MEAN_H;
static float SOCIAL_VAR_H;
static float SOCIAL_MEAN_D;
static float SOCIAL_VAR_D;
static float WEIGHT_PHENO_H;
static float WEIGHT_SIGN_H;
static float WEIGHT_PHENO_D;
static float WEIGHT_SIGN_D;
static float SIGN_LANG_DEAF;
static float SIGN_LANG_HEAR;
static std::default_random_engine RANDOM_GENERATOR;
static int DEAF_COMMUNITY_MODEL; // 0 - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD>, 1 - <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>, 2 - <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
static std::string OUTPUT_FILE;
};