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Init version

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This commit is contained in:
Aleksey M. Mukhin
2024-10-03 18:43:04 +07:00
commit f80052961f
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individual/Individual.cpp Normal file
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#include "AbstractIndividual.h"
#include "genome/strategies/GenotypeToPhenotypeStrategy.h"
#include <iostream>
Individual::Individual(const Individual& father, const Individual& mother)
{
this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");
genotype = new Genotype(
father.getGenotype().recombinantHaploidGenotype(recombinationStrategy),
mother.getGenotype().recombinantHaploidGenotype(recombinationStrategy));
// <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
this->substrateCache = new InnerSubstratesPool();
phenotype= new Phenotype(father.getPhenotype());
this->age = 0;
this->calculateFitness();
}
Individual::Individual(Genotype* gType, Phenotype* pType, InnerSubstratesPool* sub, Gender _gender, Region* _reg):
genotype(gType), phenotype(pType), substrateCache(sub),
gender(_gender), region(_reg)
{
this->genToPhenStrategy = GenotypeToPhenotypeStrategies::getInstance("inoutbreeding");
this->phenToFitStrategy = PhenotypeToFitnessStrategy::getInstance("inoutbreeding");
this->recombinationStrategy = RecombinationStrategies::getInstance("Simple recombination");
this->age = 0;
//this->calculateFitness();
//this->phenotype
}
Individual::~Individual(){
// std::cerr<<"Destructor works"<<std::endl;
delete this->genotype;
delete this->phenotype;
//delete this->genToPhenStrategy;
//delete this->phenToFitStrategy;
//delete this->recombinationStrategy;
if(this->substrateCache != 0)
delete this->substrateCache;
}
/*bool compareOnFitness(const Individual& a, const Individual& b){
return a.getFitness() < b.getFitness();
}*/
bool compareOnFitness(const Individual* a, const Individual* b){
return a->getFitness() < b->getFitness();
}
void Individual::calculateFitness(){
this->genToPhenStrategy->calculatePhenotype(this);
this->fitness = this->phenToFitStrategy->calculateFitness(this->phenotype);
}
void Individual::calculatePhenotype(){
this->genToPhenStrategy->calculatePhenotype(this);
}