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DEC/DEC_GUI/DEC-0.0/DerevyankoReport.cpp
Aleksey M. Mukhin f80052961f Init version
2024-10-03 18:43:04 +07:00

612 lines
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#include "DerevyankoReport.h"
#include "individual/Trait.h"
#include "individual/Phenotype.h"
//#include "population/BreedingStrategies/PopulationBreedingStrategy.h"
#include "population/BreedingStrategies/NeutralEvolutionBreedStrat.h"
#include <list>
#include <fstream>
using std::string;
string DerevyankoReport::initMtDNA;
string DerevyankoReport::initMtDNA_G;
std::vector<std::string> DerevyankoReport::initMtDNAgui;
std::vector<std::string> DerevyankoReport::initMtDNA_Ggui;
BisexualPopulation* DerevyankoReport::pop_f;
BisexualPopulation* DerevyankoReport::pop_G;
BisexualPopulation* DerevyankoReport::pop_e;
BisexualPopulation* DerevyankoReport::pop_F;
BisexualPopulation* DerevyankoReport::pop_d;
BisexualPopulation* DerevyankoReport::pop_E;
BisexualPopulation* DerevyankoReport::pop_c;
BisexualPopulation* DerevyankoReport::pop_D;
BisexualPopulation* DerevyankoReport::pop_b;
BisexualPopulation* DerevyankoReport::pop_a;
BisexualPopulation* DerevyankoReport::pop_A;
BisexualPopulation* DerevyankoReport::pop_B;
BisexualPopulation* DerevyankoReport::pop_C;
int DerevyankoReport::basePopSize = 5000;
float DerevyankoReport::initBirthRate = 0.25f;
float DerevyankoReport::deltaBirthRate = 0.0002f;
int DerevyankoReport::genPerMigr_f_G;
float DerevyankoReport::part_f_to_G;
float DerevyankoReport::part_G_to_f;
int DerevyankoReport::genPerMigr_A_B;
int DerevyankoReport::genPerMigr_A_C;
int DerevyankoReport::genPerMigr_A_D;
int DerevyankoReport::genPerMigr_A_E;
int DerevyankoReport::genPerMigr_A_F;
float DerevyankoReport::part_A_to_B;
float DerevyankoReport::part_B_to_A;
float DerevyankoReport::part_A_to_C;
float DerevyankoReport::part_A_to_D;
float DerevyankoReport::part_A_to_E;
float DerevyankoReport::part_A_to_F;
float DerevyankoReport::fraction_e_founder;
float DerevyankoReport::fraction_F_founder;
float DerevyankoReport::fraction_E_founder;
float DerevyankoReport::fraction_D_founder;
float DerevyankoReport::fraction_C_founder;
float DerevyankoReport::fraction_B_founder;
QVector<double> DerevyankoReport::popSize_f;
QVector<double> DerevyankoReport::popSize_G;
QVector<double> DerevyankoReport::popSize_e;
QVector<double> DerevyankoReport::popSize_F;
QVector<double> DerevyankoReport::popSize_d;
QVector<double> DerevyankoReport::popSize_E;
QVector<double> DerevyankoReport::popSize_c;
QVector<double> DerevyankoReport::popSize_D;
QVector<double> DerevyankoReport::popSize_b;
QVector<double> DerevyankoReport::popSize_a;
QVector<double> DerevyankoReport::popSize_A;
QVector<double> DerevyankoReport::popSize_B;
QVector<double> DerevyankoReport::popSize_C;
QVector<BisexualPopulation*> DerevyankoReport::pops;
QVector<QString> DerevyankoReport::populNames;
QVector<int> DerevyankoReport::maxYval(2);
// if uncomment report, set size to 13
//QVector<int> DerevyankoReport::globalGenerations(13);
int DerevyankoReport::globalGenerations;
QVector< QVector<double> > DerevyankoReport::popSizes(2);
QVector< QVector<double> > DerevyankoReport::generations(2);
void DerevyankoReport::initVectors()
{
DerevyankoReport::popSizes[0].push_back(DerevyankoReport::basePopSize);
DerevyankoReport::popSizes[1].push_back(DerevyankoReport::basePopSize);
DerevyankoReport::generations[0].push_back(0);
DerevyankoReport::generations[1].push_back(0);
for (int i = 0; i < 2; i++)
{
DerevyankoReport::maxYval[i] = 0;
}
}
void DerevyankoReport::fillVectors(BisexualPopulation *pop, int popNum)
{
DerevyankoReport::generations[popNum].push_back(globalGenerations);
DerevyankoReport::popSizes[popNum].push_back(pop->males.size() + pop->males.size());
if (pop->males.size() + pop->males.size() > DerevyankoReport::maxYval[popNum])
{
DerevyankoReport::maxYval[popNum] = pop->males.size() + pop->males.size();
}
}
BisexualPopulation* DerevyankoReport::populationFactory(int size, std::string initMtGenome){
BisexualPopulation* ans;
std::list<Individual*> males;
std::list<Individual*> females;
Gene gene1(Gene::Sequence, "mtDna1", initMtGenome);
Chromosome chrom1("Mitochondrial chromosome");
chrom1.insertGeneToEnd(gene1);
std::vector<Chromosome> fGenome;
std::vector<Chromosome> mGenome;
fGenome.push_back(chrom1);
mGenome.push_back(chrom1);
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
Trait trait1(Trait::Discrete, "Age", 20);
// <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
InnerSubstratesPool* subPool = 0;
// (END) <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
for(int i = 0; i < size/2; i++){
Genotype* genotype = new Genotype(fGenome, mGenome);
Phenotype* phenotype = new Phenotype(trait1);
males.push_back(new Individual(genotype, phenotype, subPool, Individual::male, 0));
genotype = new Genotype(fGenome, mGenome);
phenotype = new Phenotype(trait1);
females.push_back(new Individual(genotype, phenotype, subPool, Individual::female, 0));
}
ans = new BisexualPopulation(males,females);
return ans;
}
void DerevyankoReport::separatePop(QString popName, double founder, int sepPopInd)
{
//Derfraction_founder = founder;
BisexualPopulation* population = DerevyankoReport::pops[sepPopInd]->createSubpopulation(founder);
BisexualPopulation* population_rest = DerevyankoReport::pops[sepPopInd]; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> d
NeutralEvolutionBreedingStrategy* breedStrat_d =
dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
breedStrat_d->setBirthRate(initBirthRate);
breedStrat_d->setDeathRate(initBirthRate-deltaBirthRate*2);
population_rest->setBreedingStrategy(breedStrat_d);
DerevyankoReport::pops.push_back(population);
DerevyankoReport::pops.push_back(population_rest);
QVector<double> pop_gen;
QVector<double> pop_size;
QVector<double> pop_gen_2;
QVector<double> pop_size_2;
DerevyankoReport::popSizes.push_back(pop_size);
DerevyankoReport::generations.push_back(pop_gen);
DerevyankoReport::maxYval.push_back(0);
DerevyankoReport::popSizes.push_back(pop_size_2);
DerevyankoReport::generations.push_back(pop_gen_2);
DerevyankoReport::maxYval.push_back(0);
DerevyankoReport::populNames.push_back(popName);
QString name = DerevyankoReport::populNames[sepPopInd] + "_rest";
DerevyankoReport::populNames.push_back(name);
}
void DerevyankoReport::evolution(int evol_time)
{
for(int i = 0; i < evol_time; i++)
{
for (int j = 0; j < DerevyankoReport::pops.size(); j++)
{
DerevyankoReport::pops[j]->breedAll();
DerevyankoReport::pops[j]->mutationAll();
DerevyankoReport::fillVectors(DerevyankoReport::pops[j], j);
}
DerevyankoReport::globalGenerations++;
}
}
void DerevyankoReport::reportRFBR2013_01(){
std::cout << "ReportRFBR" << std::endl;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD> (<28><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> f)
// DerevyankoReport::initMtDNA = "TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACC";
// DerevyankoReport::initMtDNA += "GCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACT";
// DerevyankoReport::initMtDNA += "TGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCCCCTCATGCTTACAA";
// DerevyankoReport::initMtDNA += "GCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCT";
// DerevyankoReport::initMtDNA += "CACCCACTAGGATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCAT";
// DerevyankoReport::initMtDNA += "TTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCA";
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> (<28><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> G)
// DerevyankoReport::initMtDNA_G = DerevyankoReport::initMtDNA;
// DerevyankoReport::initMtDNA_G.replace(60,1,"T");
// DerevyankoReport::initMtDNA_G.replace(120,1,"A");
// DerevyankoReport::initMtDNA_G.replace(180,1,"C");
// DerevyankoReport::initMtDNA_G.replace(240,1,"G");
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// //
// DerevyankoReport::basePopSize = 5000;
// DerevyankoReport::initBirthRate = 0.25f;
// DerevyankoReport::deltaBirthRate = 0.0002f;
BisexualPopulation *pop_f = populationFactory(basePopSize, DerevyankoReport::initMtDNA);
NeutralEvolutionBreedingStrategy* breedStrat_f =
dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
breedStrat_f->setBirthRate(initBirthRate);
breedStrat_f->setDeathRate(initBirthRate-deltaBirthRate);
pop_f->setBreedingStrategy(breedStrat_f);
BisexualPopulation *pop_G = populationFactory(basePopSize, DerevyankoReport::initMtDNA_G);
NeutralEvolutionBreedingStrategy* breedStrat_G =
dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
breedStrat_G->setBirthRate(initBirthRate);
breedStrat_G->setDeathRate(initBirthRate-deltaBirthRate);
pop_G->setBreedingStrategy(breedStrat_G);
DerevyankoReport::pops.push_back(pop_f);
DerevyankoReport::pops.push_back(pop_G);
DerevyankoReport::populNames.push_back("Pop_f");
DerevyankoReport::populNames.push_back("Pop_G");
///////////////////////////////////////////
//
// <09><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
//
///////////////////////////////////////////
unsigned int generation;
// <20><><EFBFBD> 1.
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 1
DerevyankoReport::genPerMigr_f_G = 100;
DerevyankoReport::part_f_to_G = 0.01f;
DerevyankoReport::part_G_to_f = 0.01f;
std::cout<<"Variant 1"<<std::endl;
// <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 2
//int genPerMigr_f_G = 1000;
//float part_f_to_G = 0.1f;
//float part_G_to_f = 0.1f;
//std::cout<<"Variant 2"<<std::endl;
DerevyankoReport::initVectors();
for(generation = 0; generation < 7/*7000*/; generation++){
std::cout<<"gen\t"<<generation<<std::endl;
DerevyankoReport::pops[0]->breedAll();
DerevyankoReport::pops[0]->mutationAll();
DerevyankoReport::pops[1]->breedAll();
DerevyankoReport::pops[1]->mutationAll();
if(generation != 0 && ((generation % genPerMigr_f_G) == 0)){
std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pops[0], DerevyankoReport::pops[1], part_f_to_G, part_G_to_f);
std::cout<<"Migration f<->G\t"<<code<<std::endl;
}
DerevyankoReport::globalGenerations++;
DerevyankoReport::fillVectors(DerevyankoReport::pops[0], 0);
DerevyankoReport::fillVectors(DerevyankoReport::pops[1], 1);
}
// // <20><><EFBFBD> 2.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> e <20> <20><> <20><><EFBFBD><EFBFBD><EFBFBD> (10 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>) f <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// DerevyankoReport::fraction_e_founder = 0.5f;
// DerevyankoReport::pop_e = DerevyankoReport::pop_f->createSubpopulation(fraction_e_founder);
// std::cout<<"pop_e has been created"<<std::endl;
// for(; generation < 15/*7010*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_e->breedAll();
// DerevyankoReport::pop_e->mutationAll();
// DerevyankoReport::pop_G->breedAll();
// DerevyankoReport::pop_G->mutationAll();
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_e, 2);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_G, 1);
// }
// // <20><><EFBFBD> 3.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><> F <20> d
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 50 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> d, <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 90% <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// DerevyankoReport::fraction_F_founder = 0.1f;
// DerevyankoReport::pop_F = DerevyankoReport::pop_e->createSubpopulation(fraction_F_founder);
// std::cout<<"pop_F has been created"<<std::endl;
// DerevyankoReport::pop_d = DerevyankoReport::pop_e; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> d
// NeutralEvolutionBreedingStrategy* breedStrat_d =
// dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
// breedStrat_d->setBirthRate(initBirthRate);
// breedStrat_d->setDeathRate(initBirthRate-deltaBirthRate*2);
// DerevyankoReport::pop_d->setBreedingStrategy(breedStrat_d);
// std::cout<<"pop_e -> pop_d\tPop dynamics coeffs have been changed:\td =\t";
// std::cout<<(initBirthRate-deltaBirthRate*2)<<std::endl;
// for(; generation < 25/*7060*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_d->breedAll();
// DerevyankoReport::pop_d->mutationAll();
// DerevyankoReport::pop_F->breedAll();
// DerevyankoReport::pop_F->mutationAll();
// DerevyankoReport::pop_G->breedAll();
// DerevyankoReport::pop_G->mutationAll();
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_F, 3);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_d, 4);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_G, 1);
// }
// // <20><><EFBFBD> 4.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> d <20><> E <20> c
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 100 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> c, <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 90% <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// DerevyankoReport::fraction_E_founder = 0.1f;
// DerevyankoReport::pop_E = DerevyankoReport::pop_d->createSubpopulation(fraction_E_founder);
// std::cout<<"pop_E has been created"<<std::endl;
// DerevyankoReport::pop_c = DerevyankoReport::pop_d; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> c
// NeutralEvolutionBreedingStrategy* breedStrat_c =
// dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
// breedStrat_c->setBirthRate(initBirthRate);
// breedStrat_c->setDeathRate(initBirthRate-deltaBirthRate*2.5f);
// DerevyankoReport::pop_c->setBreedingStrategy(breedStrat_c);
// std::cout<<"pop_d -> pop_c\tPop dynamics coeffs have been changed:\td =\t";
// std::cout<<(initBirthRate-deltaBirthRate*2.5f)<<std::endl;
// for(; generation < 35/*7160*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_c->breedAll();
// DerevyankoReport::pop_c->mutationAll();
// DerevyankoReport::pop_E->breedAll();
// DerevyankoReport::pop_E->mutationAll();
// DerevyankoReport::pop_F->breedAll();
// DerevyankoReport::pop_F->mutationAll();
// DerevyankoReport::pop_G->breedAll();
// DerevyankoReport::pop_G->mutationAll();
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_F, 3);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_c, 5);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_G, 1);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_E, 6);
// }
// // <20><><EFBFBD> 5.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> c <20><> D <20> b
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 100 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> b, <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 90% <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// DerevyankoReport::fraction_D_founder = 0.1f;
// DerevyankoReport::pop_D = DerevyankoReport::pop_c->createSubpopulation(fraction_D_founder);
// std::cout<<"pop_D has been created"<<std::endl;
// DerevyankoReport::pop_b = DerevyankoReport::pop_c; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> b
// NeutralEvolutionBreedingStrategy* breedStrat_b =
// dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
// breedStrat_b->setBirthRate(initBirthRate);
// breedStrat_b->setDeathRate(initBirthRate-deltaBirthRate*3.f);
// DerevyankoReport::pop_b->setBreedingStrategy(breedStrat_b);
// std::cout<<"pop_c -> pop_b\tPop dynamics coeffs have been changed:\td =\t";
// std::cout<<(initBirthRate-deltaBirthRate*3.f)<<std::endl;
// for(; generation < 45/*7260*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_b->breedAll();
// DerevyankoReport::pop_b->mutationAll();
// DerevyankoReport::pop_D->breedAll();
// DerevyankoReport::pop_D->mutationAll();
// DerevyankoReport::pop_E->breedAll();
// DerevyankoReport::pop_E->mutationAll();
// DerevyankoReport::pop_F->breedAll();
// DerevyankoReport::pop_F->mutationAll();
// DerevyankoReport::pop_G->breedAll();
// DerevyankoReport::pop_G->mutationAll();
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_F, 3);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_b, 7);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_G, 1);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_E, 6);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_D, 8);
// }
// // <20><><EFBFBD> 6.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> b <20><> C <20> a
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 200 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> a, <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 90% <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// DerevyankoReport::fraction_C_founder = 0.1f;
// DerevyankoReport::pop_C = DerevyankoReport::pop_b->createSubpopulation(fraction_C_founder);
// std::cout<<"pop_C has been created"<<std::endl;
// DerevyankoReport::pop_a = DerevyankoReport::pop_b; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> b
// NeutralEvolutionBreedingStrategy* breedStrat_a =
// dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
// breedStrat_a->setBirthRate(initBirthRate);
// breedStrat_a->setDeathRate(initBirthRate-deltaBirthRate*3.5f);
// DerevyankoReport::pop_a->setBreedingStrategy(breedStrat_a);
// std::cout<<"pop_b -> pop_a\tPop dynamics coeffs have been changed:\td =\t";
// std::cout<<(initBirthRate-deltaBirthRate*3.5f)<<std::endl;
// for(; generation < 55/*7460*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_a->breedAll();
// DerevyankoReport::pop_a->mutationAll();
// DerevyankoReport::pop_C->breedAll();
// DerevyankoReport::pop_C->mutationAll();
// DerevyankoReport::pop_D->breedAll();
// DerevyankoReport::pop_D->mutationAll();
// DerevyankoReport::pop_E->breedAll();
// DerevyankoReport::pop_E->mutationAll();
// DerevyankoReport::pop_F->breedAll();
// DerevyankoReport::pop_F->mutationAll();
// DerevyankoReport::pop_G->breedAll();
// DerevyankoReport::pop_G->mutationAll();
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_F, 3);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_a, 9);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_G, 1);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_E, 6);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_D, 8);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_C, 10);
// }
// // <20><><EFBFBD> 7.
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> a <20><> A <20> B
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 2540 <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> A, <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 50% <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>,
// // <20><> <20><><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>.
// // <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> A <20> B, <20> <20><><EFBFBD><EFBFBD><EFBFBD> <20><> A <20> C, D, E, F (G <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)
// DerevyankoReport::fraction_B_founder = 0.5f;
// DerevyankoReport::pop_B = DerevyankoReport::pop_a->createSubpopulation(fraction_B_founder);
// std::cout<<"pop_B has been created"<<std::endl;
// DerevyankoReport::pop_A = DerevyankoReport::pop_a; // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> A
// NeutralEvolutionBreedingStrategy* breedStrat_A =
// dynamic_cast<NeutralEvolutionBreedingStrategy*>(PopulationBreedingStrategy::getInstance("neutral"));
// breedStrat_A->setBirthRate(initBirthRate);
// breedStrat_A->setDeathRate(initBirthRate-deltaBirthRate*4.f);
// DerevyankoReport::pop_A->setBreedingStrategy(breedStrat_A);
// std::cout<<"pop_a -> pop_A\tPop dynamics coeffs have been changed:\td =\t";
// std::cout<<(initBirthRate-deltaBirthRate*4.f)<<std::endl;
// // <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> 1
// DerevyankoReport::genPerMigr_A_B = 100;
// DerevyankoReport::genPerMigr_A_C = 150;
// DerevyankoReport::genPerMigr_A_D = 200;
// DerevyankoReport::genPerMigr_A_E = 250;
// DerevyankoReport::genPerMigr_A_F = 300;
// DerevyankoReport::part_A_to_B = 0.01f;
// DerevyankoReport::part_B_to_A = 0.01f;
// DerevyankoReport::part_A_to_C = 0.005f;
// DerevyankoReport::part_A_to_D = 0.005f;
// DerevyankoReport::part_A_to_E = 0.005f;
// DerevyankoReport::part_A_to_F = 0.005f;
// for(; generation < 65/*10001*/; generation++){
// std::cout<<"gen\t"<<generation<<std::endl;
// DerevyankoReport::pop_A->breedAll();
// DerevyankoReport::pop_A->mutationAll();
// DerevyankoReport::pop_B->breedAll();
// DerevyankoReport::pop_B->mutationAll();
// DerevyankoReport::pop_C->breedAll();
// DerevyankoReport::pop_C->mutationAll();
// DerevyankoReport::pop_D->breedAll();
// DerevyankoReport::pop_D->mutationAll();
// DerevyankoReport::pop_E->breedAll();
// DerevyankoReport::pop_E->mutationAll();
// DerevyankoReport::pop_F->breedAll();
// DerevyankoReport::pop_F->mutationAll();
// if((generation % genPerMigr_A_B) == 0){
// std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pop_A, DerevyankoReport::pop_B, part_A_to_B, part_B_to_A);
// std::cout<<"Migration A<->B\t"<<code<<std::endl;
// }
// if((generation % genPerMigr_A_C) == 0){
// std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pop_A, DerevyankoReport::pop_C, part_A_to_C, 0.f);
// std::cout<<"Migration A->C\t"<<code<<std::endl;
// }
// if((generation % genPerMigr_A_D) == 0){
// std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pop_A, DerevyankoReport::pop_D, part_A_to_D, 0.f);
// std::cout<<"Migration A->D\t"<<code<<std::endl;
// }
// if((generation % genPerMigr_A_E) == 0){
// std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pop_A, DerevyankoReport::pop_E, part_A_to_E, 0.f);
// std::cout<<"Migration A->E\t"<<code<<std::endl;
// }
// if((generation % genPerMigr_A_F) == 0){
// std::string code = BisexualPopulation::mutualMigration(DerevyankoReport::pop_A, DerevyankoReport::pop_F, part_A_to_F, 0.f);
// std::cout<<"Migration A->F\t"<<code<<std::endl;
// }
// DerevyankoReport::globalGenerations++;
// DerevyankoReport::fillVectors(DerevyankoReport::pop_F, 3);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_A, 11);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_B, 12);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_E, 6);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_D, 8);
// DerevyankoReport::fillVectors(DerevyankoReport::pop_C, 10);
// }
// // <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> - <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD>
// std::ofstream file("GenStatistics.pop_A.fasta");
// DerevyankoReport::pop_A->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_A.txt");
// DerevyankoReport::pop_A->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// file.open("GenStatistics.pop_B.fasta");
// DerevyankoReport::pop_B->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_B.txt");
// DerevyankoReport::pop_B->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_C.fasta");
// DerevyankoReport::pop_C->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_C.txt");
// DerevyankoReport::pop_C->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_D.fasta");
// DerevyankoReport::pop_D->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_D.txt");
// DerevyankoReport::pop_D->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_E.fasta");
// DerevyankoReport::pop_E->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_E.txt");
// DerevyankoReport::pop_E->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_F.fasta");
// DerevyankoReport::pop_F->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_F.txt");
// DerevyankoReport::pop_F->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_G.fasta");
// DerevyankoReport::pop_G->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_G.txt");
// DerevyankoReport::pop_G->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
// ////////////////////////////////////////
// file.open("GenStatistics.pop_flittle.fasta");
// DerevyankoReport::pop_f->putGeneticStatisticsToStream(file);
// file.close();
// file.open("GenStatistics.pop_flittle.txt");
// DerevyankoReport::pop_f->putGeneticSimpleStatisticsToStream(file);
// file.close();
// ////////////////////////////////////////
}
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